PepX: a structural database of protein-peptide complexes
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6-bladed beta-propeller
7-bladed beta-propeller
Acid proteases
Acyl-CoA N-acyltransferases (Nat)
Acyl carrier protein-like
alpha-alpha superhelix
alpha/beta-Hydrolases
Anticodon-binding domain-like
Antivirulence factor
beta-Grasp (ubiquitin-like)
beta-lactamase/transpeptidase-like
beta-Prism I
beta-Trefoil
C-type lectin-like
Calmodulin
Caspase-like
CI-2 family of serine protease inhibitors
ClpS-like
Common fold of diphtheria toxin/transcription factors/cytochrome f
Concanavalin A-like lectins/glucanases
Cupredoxin-like
Cyclin-like
Cyclophilin-like
Cystatin-like
Cysteine proteinases
Cystine-knot cytokines
DHS-like NAD/FAD-binding domain
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
DLC
DNA/RNA-binding 3-helical bundle
DNA clamp
Double psi beta-barrel
E2 regulatory. transactivation domain
EF Hand-like
eIF4e-like
Epsilon subunit of F1F0-ATP synthase N-terminal domain
Ferredoxin-like
FKBP-like
Flavodoxin-like
FnI-like domain
Four-helical up-and-down bundle
Galactose-binding domain-like
Gelsolin-like
Globin-like
Glucocorticoid receptor-like (DNA-binding domain)
gp120 core
Heat shock protein 70kD (HSP70). peptide-binding domain
Immunoglobulin-like beta-sandwich
immunoglobulin/albumin-binding domain-like
Inhibitor of apoptosis (IAP) repeat
Knottins (small inhibitors. toxins. lectins)
Metallo-dependent phosphatases
MHC antigen-recognition domain
Molybdenum cofactor biosynthesis proteins
Neurophysin II
Nuclear receptor ligand-binding domain
Nucleoplasmin-like/VP (viral coat and capsid proteins)
P-loop containing nucleoside triphosphate hydrolases
Parallel coiled-coil
PDZ domain-like
Pentein. beta/alpha-propeller
Periplasmic binding protein-like II
PH domain-like barrel
Phospholipase A2. PLA2
PIN domain-like
POZ domain
Profilin-like
Protein kinase-like (PK-like)
Receptor-binding domain of short tail fibre protein gp12
Regulator of G-protein signaling. RGS
Ribonuclease H-like motif
Ribosomal protein L7/12. oligomerisation (N-terminal) domain
Ribosome inactivating proteins (RIP)
RNase A-like
Rubredoxin-like
RuvA C-terminal domain-like
S-adenosyl-L-methionine-dependent methyltransferases
SAM domain-like
Serpins
SH2-like
SH3-like barrel
Single-stranded left-handed beta-helix
Snake toxin-like
SspB-like
Stalk segment of viral fusion proteins
Streptavidin-like
Subdomain of clathrin and coatomer appendage domain
Subtilisin-like
SWIB/MDM2 domain
TBP-like
Telomeric repeat binding factor (TRF) dimerisation domain
The swivelling beta/beta/alpha domain
TIM beta/alpha-barrel
TNF-like
TRAF domain-like
Transmembrane beta-barrels
Transmembrane helix hairpin
Trypsin-like serine proteases
WW domain-like
Zincin-like