PepX: a structural database of protein-peptide complexes

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SCOP Superfamily

MHC antigen-recognition domain (169)
Nuclear receptor ligand-binding domain (75)
Immunoglobulin (60)
Protein kinase-like (PK-like) (50)
Trypsin-like serine proteases (35)
EF-hand (31)
Avidin/streptavidin (26)
Acid proteases (23)
PDZ domain-like (14)
SH3-domain (14)
RNase A-like (12)
PH domain-like (11)
CheY-like (10)
Cyclin-like (9)
Subdomain of clathrin and coatomer appendage domain (9)
Subtilisin-like (9)
ARM repeat (8)
Phospholipase A2. PLA2 (8)
Protein prenylyltransferase (8)
Bacterial adhesins (7)
P-loop containing nucleoside triphosphate hydrolases (7)
Serpins (7)
DNA clamp (6)
eIF4e-like (6)
Inhibitor of apoptosis (IAP) repeat (6)
Ubiquitin-like (6)
Virus ectodomain (6)
Acyl-CoA N-acyltransferases (Nat) (5)
Profilin (actin-binding protein) (5)
Bcl-2 inhibitors of programmed cell death (4)
E set domains (4)
Kelch motif (4)

Trimerization domain of TRAF (4)
alpha-catenin/vinculin-like (3)
C-type lectin-like (3)
CI-2 family of serine protease inhibitors (3)
Cyclophilin-like (3)
ENTH/VHS domain (3)
Heat shock protein 70kD (HSP70). peptide-binding domain (3)
Leucine zipper domain (3)
Pentein (3)
SspB-like (3)
Telomeric repeat binding factor (TRF) dimerisation domain (3)
TPR-like (3)
ADC-like (2)
alpha/beta-Hydrolases (2)
ASF1-like (2)
Clathrin adaptor appendage domain (2)
ClpS-like (2)
Concanavalin A-like lectins/glucanases (2)
Cysteine proteinases (2)
Cytochrome c oxidase subunit II-like. transmembrane region (2)
DHS-like NAD/FAD-binding domain (2)
DLC (2)
Epsilon subunit of F1F0-ATP synthase N-terminal domain (2)
FKBP-like (2)
FnI-like domain (2)
NTF2-like (2)
Periplasmic binding protein-like II (2)
POZ domain (2)
Ribosomal protein L10-like (2)
SH2 domain (2)
SWIB/MDM2 domain (2)
TRAF domain-like (2)

UBA-like (2)
WD40 repeat-like (2)
WW domain (2)
(Trans)glycosidases (1)
14-3-3 protein (1)
Actin depolymerizing proteins (1)
Actin-like ATPase domain (1)
Antivirulence factor (1)
beta-lactamase/transpeptidase-like (1)
Calmodulin (1)
Cap-Gly domain (1)
Caspase-like (1)
Cell-division protein ZipA. C-terminal domain (1)
Clathrin heavy-chain terminal domain (1)
Coronavirus S2 glycoprotein (1)
Cupredoxins (1)
Cystine-knot cytokines (1)
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit (1)
E2 regulatory. transactivation domain (1)
EGF/Laminin (1)
Enolase N-terminal domain-like (1)
FAT domain of focal adhesion kinase (1)
Galactose-binding domain-like (1)
Globin-like (1)
Glucocorticoid receptor-like (DNA-binding domain) (1)
gp120 core (1)
GroEL apical domain-like (1)
Group I dsDNA viruses (1)
Influenza hemagglutinin (stalk) (1)
LuxS/MPP-like metallohydrolase (1)
Mannose-binding lectins (1)
Metallo-dependent phosphatases (1)

Metalloproteases (zincins). catalytic domain (1)
Molybdenum cofactor biosynthesis proteins (1)
Neurophysin II (1)
Nucleic acid-binding proteins (1)
Periplasmic binding protein-like I (1)
Phosphoprotein XD domain (1)
PIN domain-like (1)
Plant lectins/antimicrobial peptides (1)
Porins (1)
PYP-like sensor domain (PAS domain) (1)
Rad51 N-terminal domain-like (1)
Receptor-binding domain of short tail fibre protein gp12 (1)
Regulator of G-protein signaling. RGS (1)
Retrovirus capsid dimerization domain-like (1)
Ribosomal protein L7/12. oligomerisation (N-terminal) domain (1)
Ribosome inactivating proteins (RIP) (1)
RNA-binding domain. RBD (1)
Rotavirus nonstructural proteins (1)
S-adenosyl-L-methionine-dependent methyltransferases (1)
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor (1)
Snake toxin-like (1)
STI-like (1)
TNF-like (1)
TolB. N-terminal domain (1)
Trimeric LpxA-like enzymes (1)
Winged helix DNA-binding domain (1)
XRCC4. C-terminal oligomerization domain (1)
Zn-dependent exopeptidases (1)
Zn-finger domain of Sec23/24 (1)

PepX v1, with the support of

Copyright © 2009, Switch Laboratory