Protein-Peptide Complexes
This is a listing of all the protein-peptide complexes in the database. You can click on the PDB Identifier to see the full version of the complex. Note that this listing contains redundant complexes. To see the non-redundant complexes take a look at the clusters.
| PDB Identifier | Description | SCOP Fold |
Ligand #Residues |
Ligand Chain | Receptor Chain | pdb.org | |
|---|---|---|---|---|---|---|---|
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1AB9 | CRYSTAL STRUCTURE OF BOVINE GAMMA-CHYMOTRYPSIN | 5 | D | CB |
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1BC5 | CHEMOTAXIS RECEPTOR RECOGNITION BY PROTEIN METHYLTRANSFERASE CHER | S-adenosyl-L-methionine-dependent methyltransferases | 5 | T | A |
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1BE9 | THE THIRD PDZ DOMAIN FROM THE SYNAPTIC PROTEIN PSD-95 IN COMPLEX WITH A C-TERMINAL PEPTIDE DERIVED FROM CRIPT. | PDZ domain-like | 5 | B | A |
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1BHX | X-RAY STRUCTURE OF THE COMPLEX OF HUMAN ALPHA THROMBIN WITH THE INHIBITOR SDZ 229-357 | 5 | E | B |
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1EE4 | CRYSTAL STRUCTURE OF YEAST KARYOPHERIN (IMPORTIN) ALPHA IN A COMPLEX WITH A C-MYC NLS PEPTIDE | alpha-alpha superhelix | 5 | D | A |
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1ELR | Crystal structure of the TPR2A domain of HOP in complex with the HSP90 peptide MEEVD | alpha-alpha superhelix | 5 | B | A |
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1EPL | A STRUCTURAL COMPARISON OF 21 INHIBITOR COMPLEXES OF THE ASPARTIC PROTEINASE FROM ENDOTHIA PARASITICA | Acid proteases | 5 | I | E |
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1EVH | EVH1 DOMAIN FROM MURINE ENABLED IN COMPLEX WITH ACTA PEPTIDE | PH domain-like barrel | 5 | B | A |
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1FCH | CRYSTAL STRUCTURE OF THE PTS1 COMPLEXED TO THE TPR REGION OF HUMAN PEX5 | alpha-alpha superhelix | 5 | C | A |
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1GMD | X-ray crystal structure of gamma-chymotrypsin in hexane | 5 | B | GF |
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1GYB | N77Y POINT MUTANT OF YNTF2 BOUND TO FXFG NUCLEOPORIN REPEAT | Cystatin-like | 5 | E | AB |
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1HTM | STRUCTURE OF INFLUENZA HAEMAGGLUTININ AT THE PH OF MEMBRANE FUSION | Stalk segment of viral fusion proteins | 5 | A | B |
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1IHJ | Crystal Structure of the N-terminal PDZ domain of InaD in complex with a NorpA C-terminal peptide | PDZ domain-like | 5 | C | B |
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1JQ8 | Design of specific inhibitors of phospholipase A2: Crystal structure of a complex formed between phospholipase A2 from Daboia russelli pulchella and a designed pentapeptide Leu-Ala-Ile-Tyr-Ser at 2.0 resolution | Phospholipase A2. PLA2 | 5 | P | A |
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1JQ9 | Crystal structure of a complex formed between phospholipase A2 from Daboia russelli pulchella and a designed pentapeptide Phe-Leu-Ser-Tyr-Lys at 1.8 resolution | Phospholipase A2. PLA2 | 5 | P | A |
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1JUQ | GGA3 VHS domain complexed with C-terminal peptide from cation-dependent Mannose 6-phosphate receptor | alpha-alpha superhelix | 5 | E | A |
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1JWY | CRYSTAL STRUCTURE OF THE DYNAMIN A GTPASE DOMAIN COMPLEXED WITH GDP, DETERMINED AS MYOSIN FUSION | P-loop containing nucleoside triphosphate hydrolases | 5 | C | AB |
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1JX2 | CRYSTAL STRUCTURE OF THE NUCLEOTIDE-FREE DYNAMIN A GTPASE DOMAIN, DETERMINED AS MYOSIN FUSION | P-loop containing nucleoside triphosphate hydrolases | 5 | C | BD |
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1KL5 | an engineered streptavidin with improved affinity for the strep-tag II peptide : SAm2-StrepII | Streptavidin-like | 5 | E | AD |
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1KYD | AP-2 CLATHRIN ADAPTOR ALPHA-APPENDAGE IN COMPLEX WITH EPSIN DPW PEPTIDE | Subdomain of clathrin and coatomer appendage domain | 5 | P | A |
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1KYF | AP-2 CLATHRIN ADAPTOR ALPHA-APPENDAGE IN COMPLEX WITH EPS15 DPF PEPTIDE | Subdomain of clathrin and coatomer appendage domain | 5 | P | A |
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1KYU | AP-2 CLATHRIN ADAPTOR ALPHA-APPENDAGE IN COMPLEX WITH EPS15 DPF PEPTIDE | Subdomain of clathrin and coatomer appendage domain | 5 | P | A |
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1KZP | PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH A FARNESYLATED K-RAS4B PEPTIDE PRODUCT | alpha-alpha superhelix | 5 | C | AB |
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1MF4 | Structure-based design of potent and selective inhibitors of phospholipase A2: Crystal structure of the complex formed between phosholipase A2 from Naja Naja sagittifera and a designed peptide inhibitor at 1.9 A resolution | Phospholipase A2. PLA2 | 5 | B | A |
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1MFL | The Structure of ERBIN PDZ domain bound to the Carboxy-terminal tail of the ErbB2 Receptor | PDZ domain-like | 5 | B | A |
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1NRR | CRYSTALLOGRAPHIC STRUCTURES OF THROMBIN COMPLEXED WITH THROMBIN RECEPTOR PEPTIDES: EXISTENCE OF EXPECTED AND NOVEL BINDING MODES | 5 | R | H |
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1NVQ | The Complex Structure Of Checkpoint Kinase Chk1/UCN-01 | Protein kinase-like (PK-like) | 5 | B | A |
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1NVR | The Complex Structure Of Checkpoint Kinase Chk1/Staurosporine | Protein kinase-like (PK-like) | 5 | B | A |
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1NVS | The Complex Structure Of Checkpoint Kinase Chk1/SB218078 | Protein kinase-like (PK-like) | 5 | B | A |
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1NX0 | Structure of Calpain Domain 6 in Complex with Calpastatin DIC | EF Hand-like | 5 | E | A |
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1OBY | CRYSTAL STRUCTURE OF THE COMPLEX OF PDZ2 OF SYNTENIN WITH A SYNDECAN-4 PEPTIDE. | PDZ domain-like | 5 | P | QBA |
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1OKV | CYCLIN A BINDING GROOVE INHIBITOR H-ARG-ARG-LEU-ILE-PHE-NH2 | Cyclin-like | 5 | E | B |
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1OYT | COMPLEX OF RECOMBINANT HUMAN THROMBIN WITH A DESIGNED FLUORINATED INHIBITOR | 5 | I | H |
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1PIP | CRYSTAL STRUCTURE OF PAPAIN-SUCCINYL-GLN-VAL-VAL-ALA-ALA-P-NITROANILIDE COMPLEX AT 1.7 ANGSTROMS RESOLUTION: NONCOVALENT BINDING MODE OF A COMMON SEQUENCE OF ENDOGENOUS THIOL PROTEASE INHIBITORS | Cysteine proteinases | 5 | B | A |
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1PYO | Crystal Structure of Human Caspase-2 in Complex with Acetyl-Leu-Asp-Glu-Ser-Asp-cho | Caspase-like | 5 | E | AB |
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1Q1S | Mouse Importin alpha- phosphorylated SV40 CN peptide complex | alpha-alpha superhelix | 5 | A | C |
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1R9N | Crystal Structure of human dipeptidyl peptidase IV in complex with a decapeptide (tNPY) at 2.3 Ang. Resolution | alpha/beta-Hydrolases | 5 | H | D |
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1SDX | Crystal structure of the zinc saturated C-terminal half of bovine lactoferrin at 2.0 A resolution reveals two additional zinc binding sites | Periplasmic binding protein-like II | 5 | E | A |
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1SKG | Structure-based rational drug design: Crystal structure of the complex formed between Phospholipase A2 and a pentapeptide Val-Ala-Phe-Arg-Ser | Phospholipase A2. PLA2 | 5 | B | A |
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1SP5 | Crystal structure of HIV-1 protease complexed with a product of autoproteolysis | 5 | I | A |
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1TG4 | Design of specific inhibitors of groupII phospholipase A2(PLA2): Crystal structure of the complex formed between russells viper PLA2 and designed peptide Phe-Leu-Ala-Tyr-Lys at 1.7A resolution | Phospholipase A2. PLA2 | 5 | I | A |
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1TJK | Crystal structure of the complex formed between group II phospholipase A2 with a designed pentapeptide, Phe- Leu- Ser- Thr- Lys at 1.2 A resolution | Phospholipase A2. PLA2 | 5 | I | A |
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1TN8 | Protein Farnesyltransferase Complexed with a H-Ras Peptide Substrate and a FPP Analog at 2.25A Resolution | alpha-alpha superhelix | 5 | C | AB |
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1UK4 | Crystal structure of SARS Coronavirus Main Proteinase (3CLpro) Complexed With An Inhibitor | Trypsin-like serine proteases | 5 | G | A |
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1V1T | CRYSTAL STRUCTURE OF THE PDZ TANDEM OF HUMAN SYNTENIN IN COMPLEX WITH TNEYKV PEPTIDE | PDZ domain-like | 5 | S | B |
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1W9O | CRYSTAL STRUCTURE OF THE PDZ TANDEM OF HUMAN SYNTENIN IN COMPLEX WITH TNEYYV PEPTIDE | PDZ domain-like | 5 | S | B |
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1ZYS | Co-crystal structure of Checkpoint Kinase Chk1 with a pyrrolo-pyridine inhibitor | 5 | B | A |
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2AIJ | Formylglycine generating enzyme C336S mutant covalently bound to substrate peptide CTPSR | C-type lectin-like | 5 | P | X |
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2B1N | Crystal structure of a papain-fold protein without the catalytic cysteine from seeds of Pachyrhizus erosus | 5 | B | A |
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2CE9 | A WRPW PEPTIDE BOUND TO THE GROUCHO-TLE WD40 DOMAIN. | 7-bladed beta-propeller | 5 | X | A |
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