Clusters
The clusters of the PepX database are listed here. You can change the cluster threshold (specifying the mean distance between any two complexes in a cluster) and the structural alignment (specifying the % of residues in the binding site that are aligned structurally). Read more about the clustering methodology.
| Cluster Images | Centroid Images | Size | Centroid PDB ID | Centroid Description |
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4 | 3DVE | Crystal Structure of Ca2+/CaM-CaV2.2 IQ domain complex |
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4 | 3E2B | Crystal structure of Dynein Light chain LC8 in complex with a peptide derived from Swallow |
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3 | 1A1R | HCV NS3 PROTEASE DOMAIN:NS4A PEPTIDE COMPLEX |
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3 | 1CIQ | COMPLEX OF TWO FRAGMENTS OF CI2, RESIDUES 1-40 AND 41-64 |
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3 | 1JRR | HUMAN PLASMINOGEN ACTIVATOR INHIBITOR-2.[LOOP (66-98) DELETIONMUTANT] COMPLEXED WITH PEPTIDE... |
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3 | 1KYF | AP-2 CLATHRIN ADAPTOR ALPHA-APPENDAGE IN COMPLEX WITH EPS15 DPF PEPTIDE |
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3 | 1SDZ | Crystal structure of DIAP1 BIR1 bound to a Reaper peptide |
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3 | 1TP5 | Crystal structure of PDZ3 domain of PSD-95 protein complexed with a peptide ligand KKETWV |
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3 | 1U7B | Crystal structure of hPCNA bound to residues 331-350 of the flap endonuclease-1 (FEN1) |
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3 | 2AIJ | Formylglycine generating enzyme C336S mutant covalently bound to substrate peptide CTPSR |
